miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|227757302|gb|FS283434.1|FS283434 GGTGGGTGCAATCTCGTTTGGTTCCTTCTTTCCCGGTTGTAGCCTCCTTCAACCTCGTATCATCATCGTCGGTTTTCTGC
ATCAACATGGGTAGTTCGGAACCCGGTTTTGAAGATTTTCTCGAAGAAAAGAAGCGCGTCAGGAACCCTTTAGTCCCCGT
TGGTGCACTTATCACTGCTGGTGTGCTAACGGCTGGCTTAATCAGTTTTAGACGAGGTAATTCTAACTTAGGCCAGAAGT
TAATGAGGGCTCGTGTGGTTGTCCAAGGTGCTACAGTGGCGCTCATGGTTGGCACTGCCTATTATTATGGAGAGAATCCT
TGGCTAAAAAGTGAATCAAAAAGTTAAACTTTCAATAGCTAAAATGAAAAGTTCAACTTTGTATTTCTTGGTTTCTTATT
TGTTTTAGCTGTTTATGTGAAGAGGAATTTTGCTCATTTGAGGTCAAAACCCTTGCAGACGTCTTACTTTTGGAACCTTT
TCTTTCAACGGTAAACAGTTGAATTCTTATTAATGTACTTTGATATATAGTTCTTTCAATGAAATAAATGACTCTCAATT
GTTGTTGG




Most similar to sp|Q7X843|ATL48_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis
           thaliana GN=ATL48 PE=2 SV=2
          Length = 349

 Score =  136 bits (342), Expect = 1e-31
 Identities = 67/81 (82%), Positives = 71/81 (87%)
 Frame = +3

Query: 87  MGSSEPGFEDFLEEKKRVRNPLVPVGALITAGVLTAGLISFRRGNSNLGQKLMRARVVVQ 266
           M S EP  ED  +EKKRVRNPLVP+GAL+TAGVLTAGLISFRRGNS LGQ LMRARVVVQ
Sbjct: 1   MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 267 GATVALMVGTAYYYGENPWLK 329
           GATVALMVGT YYYG+NPW K
Sbjct: 61  GATVALMVGTGYYYGDNPWKK 81